brainSCOPE Resource

Brain Single-Cell Cell-type Specific CRE Regions
Here are files that contain scCRE regions (single cell candidate cis-regulatory elements) derived from snATAC-Seq and snMultiome data (7 files for individual cell types & 1 file for peaks across all cell types).

Download all


15M .zip scCRE.PeakCalls.zip

Seperate files


4M .bed Astro.PeakCalls.bed
3.6M .bed Endo.PeakCalls.bed
6.7M .bed Exc.PeakCalls.bed
4.7M .bed Inh.PeakCalls.bed
3.6M .bed Micro.PeakCalls.bed
3.2M .bed OPC.PeakCalls.bed
4.1M .bed Oligo.PeakCalls.bed
13M .bed All.celltypes.Union.PeakCalls.bed