geneId variants.cis LD best.snp best.nominal.pv shape1 shape2 nb.perm pv.emp.perm pv.emp.beta runtime fdr_bh ZNF33B 23 0.272798030817407 chr10:42641063:G:GA 0.00571302944004159 0.856376220102955 3.51964364311567 1000 0.038961038961039 0.0363266980248959 3.93578641017278 0.911221344084288 DEAF1 123 0.253826846835914 chr11:648486:T:C 1.37330263665358e-05 0.832842752295958 15.3728100616735 1000 0.000999000999000999 0.000919489455870765 26.8737665335337 0.407793573678684 PTDSS2 28 0.727929607692453 chr11:449811:A:G 0.00180308160980447 0.899118843245622 4.68224081810285 1000 0.011988011988012 0.0140367380799564 6.49479384819667 0.882348332229062 FGFR1OP2 12 0.178821577071375 chr12:26959050:C:G 0.00302550394541368 0.878877211928672 4.96083084237155 1000 0.024975024975025 0.0257274139770704 3.57328393856684 0.904045060899666 GIT2 11 1 chr12:109941408:T:C 0.00606623330772915 1.01251314004628 2.31716949916197 1000 0.012987012987013 0.0132353376223085 1.67360318899155 0.882348332229062 NAP1L1 35 0.776244835333117 chr12:76036734:G:A 0.00567009395344575 0.947793442721425 3.64505761519918 1000 0.035964035964036 0.0254946900836509 7.66650063991547 0.904045060899666 NDUFA12 78 0.237575757575758 chr12:94981914:A:C 0.000981280465931156 0.923420059198738 8.41781964141344 1000 0.012987012987013 0.0122018343632629 7.17751479943593 0.882348332229062 DOCK9 324 0.277572778744523 chr13:98960334:T:C 0.000195408890261484 0.76594010708206 19.3290167802361 1000 0.016983016983017 0.0150129421373007 46.2745452682177 0.882348332229062 DIPK1A 67 0.785660762741423 chr1:92912476:C:T 0.00223973468076655 0.913298916597337 4.63184552623115 1000 0.012987012987013 0.0157590656159242 17.9567430377007 0.882348332229062 ZC3H13 113 0.871437682431313 chr13:46052326:G:T 0.00650068323832953 0.946967101338187 5.54694780646903 1000 0.047952047952048 0.0431245225294248 8.87520568768183 0.911221344084288 TMEM179 15 0.844811592134353 chr14:104588954:TG:T 4.15287259025732e-06 0.908733179295095 4.18516795954895 1000 0.000999000999000999 4.85166550433443e-05 3.79537448088328 0.0430342730234464 ZC3H14 26 0.370786158876908 chr14:88569727:C:G 0.00439564622133848 0.95892439614086 5.29015690800861 1000 0.026973026973027 0.0272467100902083 5.04721378087997 0.904045060899666 FUBP1 1 NA chr1:77981077:G:A 0.0453867590096976 1.03946995299826 1.06750496893571 1000 0.043956043956044 0.0428866137715052 1.02998022635778 0.911221344084288 RBFOX1 308 0.0110892364954289 chr16:7684304:A:T 0.000109389755850287 0.8229249205039 77.1293132728027 1000 0.021978021978022 0.020860478037631 80.5355461120605 0.882348332229062 FLCN 23 0.756194144795977 chr17:17210747:G:A 0.00394110383351443 0.932118828475092 3.70924632825722 1000 0.018981018981019 0.019746249665222 5.44732019503911 0.882348332229062 RPS9 5 0.432631171296255 chr19:54197855:T:C 0.00995371818466984 0.958430909405874 2.84290330945735 1000 0.036963036963037 0.0328632621478815 1.84851538340251 0.911221344084288 ZNF429 26 0.968614028147388 chr19:21510326:G:T 0.00865201968392437 0.97066590434267 1.78517135442356 1000 0.013986013986014 0.0174812434697595 3.77876184781392 0.882348332229062 AGAP1 500 0.0101528482923516 chr2:236028934:G:A 0.000170558253743236 0.8137387683125 88.7061192126613 1000 0.033966033966034 0.0350520711630248 104.559788155556 0.911221344084288 MIER1 14 1 chr1:66950418:T:C 0.00796263601545666 1.00466674016399 2.20889779503744 1000 0.018981018981019 0.0171597525943318 2.57773042519887 0.882348332229062 INSIG2 22 0.125758081182013 chr2:118112175:T:C 0.00529220091138471 0.966083519574079 6.86507811223315 1000 0.038961038961039 0.0405085415367168 4.77390558719635 0.911221344084288 ITSN2 34 0.732136738553514 chr2:24206644:C:G 0.00901583634390657 0.922810989052588 4.17459057209322 1000 0.04995004995005 0.0489040261257234 7.16163976987203 0.977139310993021 LRRFIP1 137 0.0527571181729397 chr2:237646014:T:C 0.000784211047994421 0.890474765892877 21.7492981625921 1000 0.027972027972028 0.0275188462731578 28.089931388696 0.904045060899666 DYRK1A 99 0.410886490536706 chr21:37362463:C:A 0.000621633012148681 0.826428101679468 8.56432292351825 1000 0.014985014985015 0.0139272669118438 18.8492174903552 0.882348332229062 ITSN1 141 0.0226249217877537 chr21:33795725:T:C 0.00101346530805291 0.909464251205265 30.4562778825148 1000 0.036963036963037 0.0431468956612628 34.2487359166145 0.911221344084288 CD200 51 0.231429407198162 chr3:112351729:T:A 0.000491915498056272 0.892559394426633 8.19195112794836 1000 0.00699300699300699 0.00754077968448198 10.5453893025716 0.882348332229062 EPHA6 142 0.0295558193685619 chr3:97019361:A:G 0.000573020722641981 0.869739041692561 33.8225670520032 1000 0.041958041958042 0.0336837514937671 32.5008239388466 0.911221344084288 LRRFIP2 140 0.824822061813581 chr3:37120785:TA:T 0.00530174900311486 0.897238572823305 4.54654240536338 1000 0.037962037962038 0.0361060444706057 17.589738814036 0.911221344084288 NISCH 56 0.920426065162907 chr3:52462213:C:T 0.0189958011750427 1.06037805603056 3.2141340584643 1000 0.048951048951049 0.0495982506850168 3.83681542476018 0.977139310993021 LCORL 32 0.465201465201465 chr4:17906367:T:C 0.004586457827636 0.865793739061452 4.6638858304287 1000 0.040959040959041 0.0369585148247996 5.91846183935801 0.911221344084288 RGS12 99 0.162790553290184 chr4:3403438:C:T 6.74410252490265e-05 0.840250532108478 18.6112045733325 1000 0.002997002997003 0.00385496724887315 27.0001376787821 0.882348332229062 ZFYVE28 196 0.023186957752577 chr4:2274320:T:C 0.000128290239352347 0.875036294880522 46.7591621440396 1000 0.011988011988012 0.0118775030474469 47.9470350583394 0.882348332229062 MAST4 250 0.0399202933586227 chr5:66983085:C:T 0.000253627086859165 0.867206951816876 33.4580249791038 1000 0.01998001998002 0.0167181518873227 52.156635316213 0.882348332229062 SLC25A48 336 0.182332944712581 chr5:135811847:T:C 0.000333215390536434 0.80303419482983 22.4270868731887 1000 0.015984015984016 0.0208898703233487 43.7420205990473 0.882348332229062 ZNF454 64 0.12219341810114 chr5:178955141:A:G 0.00254444008267607 0.914737791254485 10.8867025578182 1000 0.044955044955045 0.0382962574347009 14.125148165226 0.911221344084288 PSMG4 26 0.836505294547863 chr6:3270835:CAA:C 0.0119933357382329 0.949884903375302 2.75710740236595 1000 0.035964035964036 0.0393032413862528 3.49396886428197 0.911221344084288 ASNS 52 0.171214678516148 chr7:97886173:C:A 0.00103121292696828 0.905432495051862 12.7840821377311 1000 0.014985014985015 0.0204147579387584 12.2662067174911 0.882348332229062 DPP6 468 0.0086385475881408 chr7:154732148:C:A 7.48419413028056e-05 0.904027791055901 126.226899680289 1000 0.012987012987013 0.0152699384455419 93.6037060538928 0.882348332229062 LMBR1 180 0.428769903457103 chr7:156725313:T:C 0.000705286567936891 0.765866910166453 14.8879580529339 1000 0.03996003996004 0.0327316702755839 26.2521094202995 0.911221344084288 RAPGEF5 235 0.0409653856608501 chr7:22127475:G:A 0.000355412533252775 0.821191448037437 49.9444417414895 1000 0.02997002997003 0.038584523845921 63.7769237597783 0.911221344084288 ZNF138 145 0.584005746459303 chr7:64793192:T:A 0.00170720469882768 0.835927437525183 11.9178796205436 1000 0.037962037962038 0.0403719167047236 20.8086453954379 0.911221344084288 ASPH 136 0.187784043825949 chr8:61507707:C:T 0.000121527084039896 0.816402169293106 12.82912294936 1000 0.004995004995005 0.00542319166962879 24.0630260825157 0.882348332229062 GDAP1 151 0.305358210425852 chr8:74410250:C:T 0.000572930329128307 0.785178933169186 12.7750645655559 1000 0.020979020979021 0.0224781226327954 28.1614883502324 0.904045060899666 NRG1 995 0.0193778049970814 chr8:32508276:A:T 4.18880048256298e-05 0.792210855659918 122.845650972002 1000 0.014985014985015 0.0165021691611083 86.7798121094704 0.882348332229062