geneId variants.cis LD best.snp best.nominal.pv shape1 shape2 nb.perm pv.emp.perm pv.emp.beta runtime fdr_bh ATP6V0B 5 0.577327438675558 chr1:43980979:T:C 0.0138810992827173 0.941285025219858 2.18039953658034 1000 0.035964035964036 0.0373121374171416 0.320444277922312 0.850716733110829 FILIP1 183 0.491459574059335 chr6:75478614:C:A 0.001962446654596 0.849497526248906 13.9375426140196 1000 0.042957042957043 0.04892700583521 6.52193738222122 0.856812169172385 MTRF1L 47 0.111901100837844 chr6:153000350:T:C 0.00140795791090809 0.824636220798362 4.93628987831016 1000 0.017982017982018 0.0174119864059398 1.21757829586665 0.715737812579949 RARS2 89 0.498250386621395 chr6:87572935:C:T 2.68707603512386e-05 0.866482805995077 6.13663733605227 1000 0.002997002997003 0.000549776130159444 1.46567416588465 0.313372394190883 RPP21 10 0.0973442181074943 chr6:30345774:G:T 0.00957564453249793 1.04282494586222 3.57819071732861 1000 0.033966033966034 0.0289110296024118 0.515825124581655 0.822297714709527 LAMTOR4 10 0.749918420923742 chr7:100156247:G:A 0.0019509607889302 0.930015034122529 3.18572513349421 1000 0.00999000999000999 0.00901381274218005 0.481557643413544 0.594399846061796 ZNF138 145 0.571868922032567 chr7:64864507:T:C 0.00127191601884158 0.882503544118342 12.1598254380415 1000 0.032967032967033 0.0261215175160771 4.09837888876597 0.822297714709527 ZNF680 140 0.837436265098443 chr7:64555001:A:T 0.00459343299732073 0.894254286607559 6.00617426817425 1000 0.042957042957043 0.0412458947509567 2.30168692668279 0.856812169172385 DLC1 1028 0.0128117827641814 chr8:13550387:T:G 8.88742102158613e-05 0.70308329510355 143.06968824281 1000 0.047952047952048 0.0508079735644909 50.6200669686 0.856812169172385 NSD3 2 0.118337530299688 chr8:38385194:A:G 0.0259937684434259 1.03892602527583 1.99189384421147 1000 0.045954045954046 0.0451862646006478 0.214060155550639 0.856812169172385 KIAA1958 86 0.205376493898384 chr9:112571149:G:C 0.000898402867550496 0.805998393743637 13.5950858705876 1000 0.025974025974026 0.0304410759873494 4.13717634677887 0.822297714709527 B3GALNT2 78 0.412396921349297 chr1:235474653:G:C 0.00386683658725584 0.874909457101493 4.68511570353906 1000 0.030969030969031 0.0308226632277038 1.77302412589391 0.822297714709527 SNAPC3 42 0.279415699333916 chr9:15424940:G:A 0.00665482389588623 0.959276191422675 6.05092142278242 1000 0.042957042957043 0.0457619099238887 1.2701774040858 0.856812169172385 DCLRE1C 55 0.355310591123764 chr10:14953150:G:A 0.00247970110312234 0.899077724441928 12.1372020306612 1000 0.047952047952048 0.0438397952955234 2.62149883508682 0.856812169172385 EPC1 57 0.300257999738 chr10:32363510:G:A 0.000727975048126939 0.895085733764623 8.69915805245466 1000 0.013986013986014 0.0111292925753848 2.13095185756683 0.620156864903464 FAM13C 129 0.0396050086653236 chr10:59306255:G:T 0.00106675924102384 0.84266171533172 12.4032356028085 1000 0.02997002997003 0.0273989987722537 4.29581639766693 0.822297714709527 ZNF33A 27 0.35410705778227 chr10:38055772:C:G 0.0118630077957935 0.91700360011629 1.99772553022087 1000 0.045954045954046 0.0326381473844583 0.436244976520538 0.826833067072943 BEST1 19 0.609351700388001 chr11:61946118:A:G 0.000920960436550766 0.982511430049767 5.41927421641832 1000 0.00599400599400599 0.00549618969024848 0.941175337632497 0.594399846061796 DSCAML1 393 0.0141475837442439 chr11:117539713:G:A 0.000203548791124275 0.807913818131349 102.900760296955 1000 0.043956043956044 0.0466788588323805 22.2817081014315 0.856812169172385 MIR100HG 362 0.00773544853560644 chr11:122327370:A:T 0.000215190469378679 0.743985812817047 44.1945861070853 1000 0.028971028971029 0.0339190941521798 14.4935511946678 0.840603637684456 CDC42 18 0.556901268323483 chr1:22102208:A:G 0.00111926492337466 0.920539548313858 4.11052999686685 1000 0.00799200799200799 0.00720740035976618 1.0115647594134 0.594399846061796 BLOC1S1 8 0.248481919373552 chr12:55721994:C:A 0.00172957319981659 0.96826884351839 4.75215074374646 1000 0.00799200799200799 0.00963682797908227 0.542067941029867 0.594399846061796 ERBB3 18 0.454496125804151 chr12:56100038:A:C 0.000922514205780045 0.888836958622548 4.4639834545645 1000 0.00899100899100899 0.00781943356453318 1.13954908847809 0.594399846061796 GIT2 11 1 chr12:109985865:AAC:A 0.0212079095279216 0.972101246139568 2.24683469306862 1000 0.048951048951049 0.0515033319595907 0.291297276814779 0.856812169172385 DCAF8 34 0.913971218908723 chr1:160255806:C:G 0.00457127898922671 0.972011866850947 2.67127665160996 1000 0.012987012987013 0.0138552634201661 1.14032178322474 0.68673914343432 HIP1R 19 0.816879308783213 chr12:122842051:G:T 0.00908010886903532 0.928408390850479 4.47000778094334 1000 0.048951048951049 0.0513722981139127 0.738768784205119 0.856812169172385 MGAT4C 493 0.142146132528497 chr12:86800666:C:A 0.00128537435568077 0.851175159612324 24.8128650416627 1000 0.04995004995005 0.0553751744309894 11.8201236844063 0.856812169172385 SARNP 4 0.65701222077976 chr12:55757507:T:C 0.0150209094503539 1.018323436783 1.70914982565544 1000 0.024975024975025 0.0238077088786465 0.238072256247203 0.822297714709527 TCTN1 8 0.120823803233418 chr12:110624735:G:A 0.0055269534698017 0.878656978443657 4.32376757498568 1000 0.041958041958042 0.0385799781391449 0.551343715190887 0.856812169172385 ENOX1 540 0.0296767562202483 chr13:43316774:GA:G 0.000109959083290367 0.774675452796356 67.9205953771097 1000 0.026973026973027 0.0242324141749701 21.2538820743561 0.822297714709527 SPATA13 458 0.00419419645255208 chr13:24213411:T:C 2.58226565663655e-06 0.620746786039742 52.3656069795515 1000 0.00799200799200799 0.0044161605595785 19.6915905117989 0.594399846061796 DMAC2L 52 0.898815788220419 chr14:50309827:A:G 0.00312950133842427 0.899013887930952 3.9257448436627 1000 0.01998001998002 0.0196197547540367 1.88695873022079 0.770958031595312 ITPK1 180 0.0323316328420561 chr14:92934971:T:C 0.00035020691289922 0.806424616334272 33.0978887253773 1000 0.023976023976024 0.0292236290005934 9.63131621281306 0.822297714709527 NPC2 3 0.98131644216161 chr14:74481477:C:T 0.0423956341615985 1.0511439353831 1.16115579674044 1000 0.042957042957043 0.041940313166108 0.209036632378896 0.856812169172385 PAPOLA 4 0.168527068682351 chr14:96523134:G:T 0.000922228883987963 1.04917557607164 2.24027995469464 1000 0.003996003996004 0.0015069523828926 0.29836695988973 0.429481429124391 HEXA 10 0.716213758171445 chr15:72343003:C:T 0.000689245306197073 0.91643812264518 2.59268028962396 1000 0.002997002997003 0.0030888419312266 0.451447916030884 0.586879966933054 ADAMTS4 10 0.204693801752201 chr1:161197908:T:G 0.000822888944829403 0.938036665772187 4.52676639417881 1000 0.00599400599400599 0.00535988181456326 0.653259030977885 0.594399846061796 SENP8 31 0.548614284945252 chr15:72112972:T:C 0.00148198891103091 0.859330005401099 4.7919661288968 1000 0.016983016983017 0.0147950267953001 1.45154078404109 0.702763772776755 FAHD1 13 0.572724070575372 chr16:1831144:G:C 0.000964028894349545 0.841899158663349 3.63949983477851 1000 0.014985014985015 0.00892212364988474 0.799400885899862 0.594399846061796 FAM234A 30 0.218934341404008 chr16:237079:A:T 0.00101523247282975 0.827139946387264 7.00287236284834 1000 0.014985014985015 0.0175795252212619 1.4833709081014 0.715737812579949 IGSF8 11 0.533091901308416 chr1:160098839:A:C 0.00649204437265594 0.970397734115421 3.50052493034588 1000 0.024975024975025 0.0254273163766686 0.795199183622996 0.822297714709527 GOSR2 84 0.630599402490075 chr17:46971198:A:T 0.00522155236309663 0.821889082187279 5.2622046839294 1000 0.046953046953047 0.0543024116939217 2.71868240435918 0.856812169172385 ATP5F1A 59 0.871014026098812 chr18:46107121:T:C 0.00906279985931246 0.858962988368681 2.55448124556259 1000 0.03996003996004 0.0403292918517934 0.522541717688243 0.856812169172385 MBP 259 0.0159314017527738 chr18:77011503:T:C 0.000263955879598265 0.787198376438628 72.7474094356528 1000 0.045954045954046 0.0475301307363385 14.1799743215243 0.856812169172385 SCN1B 6 0.65661084371772 chr19:35041401:T:G 0.0104790152725477 0.956585262314421 2.63712808134383 1000 0.044955044955045 0.0323555606729442 0.408924579620361 0.826833067072943 ZNF226 10 0.63217498389352 chr19:44165807:T:C 0.00872349314105025 0.924322967084161 3.16300386977124 1000 0.041958041958042 0.0365882294921107 0.694804922739665 0.850716733110829 ZNF320 84 0.112122803180463 chr19:52892713:A:C 0.000324825339628632 0.889637575259805 19.364968727178 1000 0.010989010989011 0.0114239422482217 4.13878831068675 0.620156864903464 AHSA2P 20 0.390889032060605 chr2:61191968:C:A 0.0054985308478519 0.923918134849179 6.16710784379345 1000 0.041958041958042 0.0443557945697083 1.48717304468155 0.856812169172385 PCNX2 295 0.0112031251089598 chr1:233087077:C:A 0.000195836169847641 0.786850126718035 56.6607212213908 1000 0.02997002997003 0.0310164927478155 11.6169114351273 0.822297714709527 ITGB1BP1 14 0.697174380320338 chr2:9406561:C:T 0.00801096330617423 1.01298654737215 3.87451866842027 1000 0.033966033966034 0.0292131222655847 0.535289057095846 0.822297714709527 NDUFA10 215 0.0541922113938816 chr2:239907425:T:C 7.33537031867293e-05 0.779427883353798 33.3114252927841 1000 0.015984015984016 0.00990666410102994 8.5756055076917 0.594399846061796 ATP13A2 24 0.737813674942288 chr1:16986662:G:A 0.0048522864711561 0.874368941846963 4.5908978551941 1000 0.036963036963037 0.0369506570847548 1.15787763992945 0.850716733110829 POMGNT1 21 0.50480995468919 chr1:46186469:C:T 0.00572523132782576 0.886992094017951 4.70019337908946 1000 0.040959040959041 0.0414413184948475 0.773192453384399 0.856812169172385 PPM1B 32 0.807951322380726 chr2:44232136:C:T 0.00404734151446595 0.978013999331881 4.59370117396353 1000 0.022977022977023 0.0202883692525082 2.04946101109187 0.770958031595312 RNF103 32 0.391069249219626 chr2:86614652:G:A 0.00143143747169394 0.922226962499048 6.41811803509802 1000 0.016983016983017 0.0135213528191136 1.4803622841835 0.68673914343432 DYNLRB1 15 0.982100668531907 chr20:34525419:A:G 0.0122326133232057 0.976990864477874 2.06582488555272 1000 0.031968031968032 0.0274490825471055 0.460294540723165 0.822297714709527 PANK2 65 0.46083115081781 chr20:3913937:T:C 0.000349455711305069 0.910329660973144 12.7113039584034 1000 0.011988011988012 0.00744072206159461 2.73696498473485 0.594399846061796 DIP2A 188 0.227425727429397 chr21:46572488:G:A 0.00065589289097967 0.771668073405449 18.3139530166486 1000 0.032967032967033 0.0353284134361307 5.60216244061788 0.850716733110829 SGSM3 2 0.328274240394333 chr22:40413030:A:G 0.00138524428129627 0.987468033067751 1.79174667210533 1000 0.002997002997003 0.00267995024740079 0.179801150163015 0.586879966933054 SLC2A11 56 0.13920258392519 chr22:23890688:G:A 0.000639015041631108 0.815192620526569 10.24486805991 1000 0.015984015984016 0.0175499605514471 2.55181552569071 0.715737812579949 SENP7 393 0.961802174638471 chr3:101422015:T:C 0.00362651854212004 0.967505002770379 7.38780887153857 1000 0.030969030969031 0.0301340307595183 3.25352291663488 0.822297714709527 SRPRB 41 0.179780637127358 chr3:133817811:G:C 0.000487914425724489 0.883119442633625 10.2804763075018 1000 0.00999000999000999 0.00967308046774484 2.11465941270192 0.594399846061796 TADA3 19 0.251076690236522 chr3:9781618:T:G 0.00189451699062215 0.92657611547517 5.92959270000587 1000 0.013986013986014 0.0159218992190001 1.05379994312922 0.715737812579949 HERC3 91 0.652771750249751 chr4:88707849:A:G 0.000227177171798987 0.769156046759356 7.83890772377827 1000 0.014985014985015 0.00821637322521592 2.93936524391174 0.594399846061796 CREBRF 95 0.627481452926506 chr5:173072336:C:T 0.000943582849317837 0.934501088790503 5.19968583156603 1000 0.00999000999000999 0.00708127761926038 2.47381723721822 0.594399846061796 SERINC5 218 0.0382909235558803 chr5:80173816:C:G 0.000283751015756506 0.711609201317526 38.6656634633324 1000 0.040959040959041 0.043942936400483 10.0658315141996 0.856812169172385