geneId variants.cis LD best.snp best.nominal.pv shape1 shape2 nb.perm pv.emp.perm pv.emp.beta runtime fdr_bh RPS20 14 0.896667635654789 chr8:56076711:AT:A 0.0157747039426253 0.966615470478435 1.8504985366606 1000 0.03996003996004 0.0328179925663869 1.1372220436732 0.782461411842202 SNHG6 1 NA chr8:66927881:T:C 0.0431224465331748 1.06631196335122 1.09552611349894 1000 0.041958041958042 0.0384187487849195 0.176251983642578 0.789780762847963 ERCC6L2 128 0.46364987928464 chr9:95905928:T:G 0.00156322274476139 0.837977212444013 7.37734243949807 1000 0.021978021978022 0.0248867993931176 7.69470833937327 0.782461411842202 CRTAC1 33 0.0258123069285196 chr10:97874784:T:C 0.0019823751053416 0.932357564648579 11.4627872777631 1000 0.035964035964036 0.0297781225221626 2.97979558706284 0.782461411842202 FAM13C 97 0.0475995918703394 chr10:59329550:A:G 0.000944878395392701 0.854870955480731 10.0906889130953 1000 0.015984015984016 0.0195797558160011 5.64381855328878 0.778491091244204 B3GALNT2 78 0.341193894349935 chr1:235505211:A:C 0.00117816353324929 0.8511010559062 4.98701751186696 1000 0.014985014985015 0.0131535863926061 3.2755602757136 0.714626510804606 PRXL2A 57 0.362031982385854 chr10:80431887:A:G 0.00107791194192353 0.895711862707799 7.47997396629364 1000 0.013986013986014 0.0137501464881516 4.04407635132472 0.714626510804606 ZNF33A 18 0.98688035252086 chr10:38055772:C:G 0.000486531765826026 0.996100661858317 2.09915211175116 1000 0.001998001998002 0.00104965023040253 0.565075850486755 0.260838082255029 CAPZB 275 0.215492326914547 chr1:19482891:A:C 0.000550818931057684 0.731164164167088 19.8928158443118 1000 0.038961038961039 0.0399280960847432 19.7860507885615 0.789780762847963 HSPA8 8 0.238534757066637 chr11:123055765:A:G 0.0114798542276597 0.911980593355254 2.73416500368465 1000 0.042957042957043 0.0430477295210371 0.747754967212677 0.789780762847963 MRE11 93 0.433094085977268 chr11:94482965:C:G 0.00396813365299431 0.868546391772681 7.23061662023131 1000 0.047952047952048 0.0471830863678518 5.32466711600622 0.789780762847963 CDC42 18 0.615314807860809 chr1:22084526:T:G 0.00820454623562661 0.889963711136466 3.86832199924907 1000 0.04995004995005 0.0472936534716293 2.22048812707265 0.789780762847963 PSMA1 69 0.452322867189299 chr11:14510792:C:T 0.00612567069805436 0.885110617519413 5.78977373378716 1000 0.048951048951049 0.0532010562531299 2.75525025526683 0.789780762847963 TMEM25 3 0.0835496745323009 chr11:118548989:T:C 0.0116369196682696 0.962083058831144 2.26071913287966 1000 0.031968031968032 0.0302239373188823 0.431626669565837 0.782461411842202 TMEM41B 51 0.678467764197126 chr11:9290038:AACAC:A 0.00254877984269475 0.874376740445061 5.44122871222346 1000 0.025974025974026 0.0245276372142953 2.28048464854558 0.782461411842202 AGAP2 15 0.518263014663543 chr12:57732451:C:A 0.00639240411808317 0.883117205142783 3.93795813383571 1000 0.048951048951049 0.0396286274335815 1.25544003645579 0.789780762847963 GIT2 12 0.958692454469317 chr12:110000433:G:T 0.0159321365074563 1.05825217118283 3.48170053361993 1000 0.045954045954046 0.045137202932711 0.774963156382243 0.789780762847963 IGF1 37 0.477294089070747 chr12:102450458:G:A 0.00134940313537457 0.852770683345899 8.54705069671501 1000 0.01998001998002 0.0232281483468834 3.35786682764689 0.782461411842202 NDUFA12 40 0.332253809310771 chr12:94984162:T:C 0.000882834787022668 0.89195583608385 6.60994924324553 1000 0.012987012987013 0.0105072462482588 1.42760806481044 0.714626510804606 PTPN11 8 0.443784594272203 chr12:112484725:G:A 0.00115080384292243 0.99129983394791 3.35720913361468 1000 0.00599400599400599 0.00405922248169052 1.10999990701675 0.36680610425458 TMPO 41 0.501304832886183 chr12:98523010:G:A 0.000326910529010904 0.916616148926649 4.2495510996179 1000 0.000999000999000999 0.00246230128794655 1.42299021085103 0.333795584046349 NOVA1 89 0.859158840124273 chr14:26595700:A:G 0.00333703125305151 0.861434717347918 4.0955057433606 1000 0.027972027972028 0.0256128920274053 3.67195842663447 0.782461411842202 GUK1 6 0.637376832363439 chr1:228135125:C:T 0.00960927014590518 0.988668513575291 2.2433552661303 1000 0.02997002997003 0.0224358167351263 0.666165471076965 0.782461411842202 HP1BP3 53 0.779648463266041 chr1:20765368:G:T 0.000146442335572372 0.871419366230304 4.59637621099574 1000 0.000999000999000999 0.00178609560553714 4.66019259691238 0.333795584046349 JMJD6 19 0.110553124378457 chr17:76710298:C:T 0.000238315513076182 0.926297479075248 5.84598086381103 1000 0.00799200799200799 0.00231498725921386 1.59481346607208 0.333795584046349 ATP5F1A 59 0.862525762053022 chr18:46076654:T:A 0.0107868152912797 1.03017381840896 3.04934950487471 1000 0.02997002997003 0.0291001957930505 1.05082766215007 0.782461411842202 NETO1 88 0.0195882454822479 chr18:72737392:A:T 0.000260818584707612 0.783673789748807 12.5829518010337 1000 0.00899100899100899 0.0121009355370278 8.26976809899012 0.714626510804606 KHDRBS1 1 NA chr1:32010749:G:T 0.0561878046737667 1.0742178829024 1.05407216291878 1000 0.04995004995005 0.0478737916672345 0.20503853559494 0.789780762847963 CA11 13 0.282543873637382 chr19:48650671:A:G 0.0045302087490009 0.915714417878532 4.44376366603142 1000 0.034965034965035 0.0284708506356875 1.12990074157715 0.782461411842202 SUGP2 43 0.805036938323366 chr19:18998736:G:A 0.00647185454199706 0.961798111194412 4.08708533160896 1000 0.03996003996004 0.0304356341915853 2.814253226916 0.782461411842202 ZNF568 253 0.641456996292802 chr19:36918659:A:G 0.00103880546668611 0.792245916901398 6.14024869984716 1000 0.01998001998002 0.0193139238082759 5.09572425683339 0.778491091244204 ZNF626 175 0.617471348592956 chr19:20645300:C:CAA 4.82664742618155e-08 0.825282311813242 10.2171515301061 1000 0.000999000999000999 6.59983658301501e-06 6.07478588024775 0.00328011878175846 NFASC 137 0.0315178425293402 chr1:204997300:C:G 0.000494858348988325 0.780660318260285 32.0420475911423 1000 0.045954045954046 0.0420819272665645 13.9056414365768 0.789780762847963 DPP10 899 0.0110561891894155 chr2:115366926:T:C 2.87218723071803e-06 0.725022929600868 104.259542534415 1000 0.002997002997003 0.0030480604288488 68.4676576336225 0.333795584046349 NDUFS1 90 0.83700989793858 chr2:206118622:T:A 0.000895828734190807 0.872572516033411 4.29885313780135 1000 0.00899100899100899 0.00809568848564197 4.74380614757538 0.619008796517548 ZEB2 36 0.0590168560253852 chr2:144469483:C:T 0.000652640401574534 0.902123616600052 13.7734900170407 1000 0.014985014985015 0.0147064398865342 3.59881414175034 0.714626510804606 ZNF638 83 0.62118118942649 chr2:71387313:G:A 0.0013987169868126 0.856976054909655 6.56011303127112 1000 0.017982017982018 0.0186981616719234 4.42992140054703 0.778491091244204 CEP250 80 0.902241859632159 chr20:35467881:T:C 0.00104259163156417 0.897720632557827 2.83863380918095 1000 0.004995004995005 0.00549624526944985 2.5146496574084 0.455272316486096 CRELD2 12 0.219302377818125 chr22:49927975:C:T 0.00957427975180314 0.949059915809268 3.87048708966264 1000 0.04995004995005 0.0438870494662107 1.49194359779358 0.789780762847963 MAPK1 88 0.721245988267776 chr22:21867813:A:T 0.00390683388397672 0.914030070231255 4.09576121975141 1000 0.022977022977023 0.0232673305811812 5.80116744836171 0.782461411842202 ATP2C1 55 0.675079800266662 chr3:130854943:T:C 0.00246541681900381 0.8721207292302 7.36061637140882 1000 0.023976023976024 0.0313465334483588 3.42548255125682 0.782461411842202 LRCH3 29 0.055393441898237 chr3:197843263:C:A 0.00180007519749181 0.911692689313717 10.4140408086533 1000 0.023976023976024 0.0272497936633738 2.65765502055486 0.782461411842202 MAP4 105 0.923108906356117 chr3:47887296:T:C 0.00354569966962126 0.873415217170839 6.83791563225497 1000 0.042957042957043 0.0400322961902755 3.18514303366343 0.789780762847963 XRN1 71 0.565266679051809 chr3:142328795:G:T 0.00269064003966479 0.951814005847152 5.19149525098316 1000 0.020979020979021 0.0173298313323859 5.13399200836817 0.778491091244204 DNAJB14 23 0.86451454351556 chr4:99910903:C:T 0.00313773807874729 0.950676236295809 3.83099535901639 1000 0.017982017982018 0.0150977431860128 1.13197446664174 0.714626510804606 LARP1B 188 0.87998322098966 chr4:128099717:C:T 0.00192278285246006 0.940133274489983 5.30119104212472 1000 0.013986013986014 0.0136157817289187 5.66677054564158 0.714626510804606 RGS12 122 0.123282334608301 chr4:3432055:T:A 0.00069646976818416 0.838511046896761 19.5717954732102 1000 0.022977022977023 0.0286814977694194 11.7907356381416 0.782461411842202 TOR1AIP2 24 0.872605659732074 chr1:179838803:T:A 0.00518917928452323 0.88864636183641 4.04666598550094 1000 0.035964035964036 0.0330617497961494 2.43044980367025 0.782461411842202 FILIP1 177 0.486873245819484 chr6:75453435:T:G 0.000125007148423673 0.880638175205001 11.8511321686094 1000 0.00899100899100899 0.00335810446726709 8.5590668241183 0.333795584046349 ZNF451 4 0.330633807726824 chr6:57126875:A:G 0.0107474707963612 0.901311357096138 2.31118397027138 1000 0.040959040959041 0.0362643742884437 0.719880604743958 0.789780762847963 ADCY1 128 0.052606301333108 chr7:45682320:T:C 4.11299211994232e-05 0.785350625322601 13.3728561962776 1000 0.002997002997003 0.0029504780886546 11.7040157556534 0.333795584046349 ZNF124 75 0.470479917761981 chr1:247176987:A:G 0.00260035615098964 0.867306571496096 8.67075673193988 1000 0.03996003996004 0.0386003123059127 6.64149192969004 0.789780762847963 BCAP29 31 0.941112478143696 chr7:107609815:G:A 7.47797508343639e-05 0.94630418043368 2.50946127911583 1000 0.000999000999000999 0.000301135063019035 1.65593020518621 0.0997760842136403 CACNA2D1 638 0.0127740099147177 chr7:82387821:T:C 0.000295981388596211 0.823891258529206 103.311424729297 1000 0.048951048951049 0.0593936124788057 45.8420785705249 0.789780762847963 ZKSCAN1 8 0.967717421882357 chr7:100012504:G:A 0.00822246208603761 0.998101758582699 1.45314869126107 1000 0.00999000999000999 0.0120294945338685 0.669165130456289 0.714626510804606 CA8 228 0.0931077547462435 chr8:60239015:C:T 0.000950673589264817 0.862519059107517 18.3573445181854 1000 0.032967032967033 0.0317222194316365 9.90221947828929 0.782461411842202