geneId variants.cis LD best.snp best.nominal.pv shape1 shape2 nb.perm pv.emp.perm pv.emp.beta runtime fdr_bh COX7A2L 43 0.565042780758598 chr2:42369380:C:T 0.00314343430040442 0.836622590994906 4.70971429123927 1000 0.034965034965035 0.0306893034550826 6.88523063659668 0.761122026953242 GTF3C3 17 0.473933164317286 chr2:196761742:T:C 0.00611961419966667 0.897615044890229 4.38500802484235 1000 0.042957042957043 0.0396464626475103 2.38463421265284 0.794265650567538 LIMS1 241 0.389084948559515 chr2:108623945:C:T 0.00237128737929371 0.827970117603444 5.59127278840494 1000 0.028971028971029 0.0291881128318226 14.6665520747503 0.761122026953242 MTX2 67 0.263807434301311 chr2:176337387:A:G 0.00358491484025003 0.878409835707297 5.73998124603625 1000 0.03996003996004 0.0339832944048085 9.8042350769043 0.76699004966802 NDUFAF7 51 0.42936401597377 chr2:37253106:A:G 0.000464869432274861 0.793790546865685 7.02309463543614 1000 0.00899100899100899 0.0112884143364964 8.28892432451248 0.558146863072731 NEUROD1 7 0.971602596447027 chr2:181663893:G:A 0.00837815636281969 1.01820260020464 1.31725616289046 1000 0.011988011988012 0.0101367319974356 0.722402866681417 0.528969579518323 PDK1 12 0.173367469015229 chr2:172550832:C:T 0.00415284559759721 0.935081275380922 5.2234602272198 1000 0.02997002997003 0.0281512418549172 1.6691977540652 0.761122026953242 PJVK 11 0.709724984124071 chr2:178447713:G:GTAC 0.00396976986433151 0.908481508875072 2.66889483276667 1000 0.020979020979021 0.0163554231300696 1.4047532637914 0.643090351740528 CEP250 81 0.937466969265577 chr20:35482231:TTTTG:T 2.99484045385157e-06 0.916726574330977 3.74012818516682 1000 0.000999000999000999 2.96183029077071e-05 5.02791664203008 0.0143162326641165 UBE2V1 43 0.492076011934631 chr20:50108711:T:A 0.00391924836812607 0.873469238287626 5.29563270969959 1000 0.042957042957043 0.0349264711010587 4.28306665023168 0.768813555224539 ZFP64 209 0.0598181495557085 chr20:52196679:G:T 0.000574692790986209 0.858981012375704 27.3163590895042 1000 0.031968031968032 0.0294651744171374 15.0144302805265 0.761122026953242 BRWD1 240 0.431730754920859 chr21:39270460:A:G 0.00292858326059009 0.79408353857772 6.76094789332944 1000 0.046953046953047 0.0468375792221037 20.1747097452482 0.81397373811417 GET1 98 0.439785443522803 chr21:39384068:T:C 8.68848972301883e-06 0.83683592393759 10.3753934924042 1000 0.001998001998002 0.000434720832542314 10.1729451576869 0.110729606346135 IFNAR2 78 0.342511110708969 chr21:33268483:A:G 4.44149878875422e-06 0.868442445930085 9.72740381861608 1000 0.000999000999000999 0.000169372457229709 6.65247786839803 0.0603982182481142 LINC00649 69 0.360058214579518 chr21:33931656:T:C 0.00186268812232493 0.823323249928565 5.73061945507463 1000 0.027972027972028 0.0249720205706519 6.6072291692098 0.742085211291206 SETD4 46 0.772743462853427 chr21:36037116:G:A 0.00746140696930675 0.863557542400351 4.48997291922292 1000 0.048951048951049 0.0546884507583357 4.04550665616989 0.81397373811417 PRPF3 18 0.964721825691243 chr1:150357880:G:T 0.00123383686052048 0.928469056496564 2.06256201988668 1000 0.00599400599400599 0.00395247664875138 1.18588716983795 0.304859036071551 FYTTD1 11 0.869371667248066 chr3:197792345:A:G 0.0113213221416771 0.883409043148821 2.62994233148276 1000 0.04995004995005 0.0456447551570764 1.94021740754445 0.81397373811417 IGSF10 21 0.29563082692034 chr3:151440714:T:TAG 0.000820699811671877 0.944516321929791 5.17216909006339 1000 0.00799200799200799 0.00583935106318895 2.10452279249827 0.371841533773782 NEK4 83 0.817682073639472 chr3:52736294:T:G 0.000669117142746423 0.971550754934966 5.17938095257698 1000 0.00699300699300699 0.0041035428299031 5.94924996693929 0.304859036071551 RPP14 72 0.689502260439271 chr3:58304902:T:C 0.00425583303517629 0.897674046647757 4.26606647755063 1000 0.027972027972028 0.0279941187022507 4.67817813952764 0.761122026953242 SLC41A3 125 0.402249527914193 chr3:126031139:A:G 0.00380916482901383 0.856203043634325 6.11787998433391 1000 0.041958041958042 0.041439960814447 7.27909347613653 0.81397373811417 RSRP1 6 0.529137872329922 chr1:25257119:C:G 0.0126431423239425 0.95373870009183 2.44375275778396 1000 0.046953046953047 0.0363416794456329 1.42106165091197 0.778091105533197 TADA3 29 0.223109401938857 chr3:9793456:T:G 0.0013382716374517 0.861476051588943 6.12624083972216 1000 0.016983016983017 0.0165912261245453 4.65058087110519 0.643090351740528 CEP44 45 0.293833818960091 chr4:174326428:T:C 0.00377308584682967 0.94144021811477 7.07329513754734 1000 0.032967032967033 0.0332858620374003 3.64462913274765 0.761122026953242 GRK4 141 0.622690732419781 chr4:3013274:G:A 0.00199521012613246 0.835011868402893 11.8643721862614 1000 0.045954045954046 0.0459233890996609 12.5148735046387 0.81397373811417 INPP4B 753 0.0104708912026032 chr4:142302047:A:G 3.40749306346755e-05 0.773940116872894 54.9580874992702 1000 0.004995004995005 0.00835605813380345 68.5381981333097 0.451480353108229 NAAA 87 0.171646232459189 chr4:75940564:C:T 0.00161482232266508 0.8533884557694 13.3954686792936 1000 0.036963036963037 0.0395352383821201 8.18028395573298 0.794265650567538 NSD2 4 0.325450158396791 chr4:1985211:G:A 0.00689055886243328 0.953048916754633 2.87195241614322 1000 0.022977022977023 0.0239212358270837 0.830256513754527 0.72290785558797 SLC9B2 29 0.495224433504712 chr4:103078752:G:A 0.000277891761438331 0.910425300740282 4.63015377627442 1000 0.00599400599400599 0.00239757654167827 3.22519636948903 0.270808743500223 SNHG8 12 0.478670164342318 chr4:118282553:A:C 0.00990042563744409 0.965411038706353 3.53397582297616 1000 0.040959040959041 0.0391872330919358 1.20495566527049 0.794265650567538 ZNF718 70 0.531545939166089 chr4:162324:A:C 0.000111629653315903 0.868691813554149 4.19737144290024 1000 0.000999000999000999 0.00132967243926923 5.55181645552317 0.200028830955074 ATP10B 246 0.0363421270554833 chr5:160773070:G:T 4.58976188386639e-05 0.758984897518549 26.8734230790614 1000 0.00999000999000999 0.00670160621505315 16.3351547638575 0.398298796047992 SNHG12 4 0.67441083416099 chr1:28582072:C:CG 0.00165962137730036 0.948590475575198 1.76768980405931 1000 0.00599400599400599 0.00398955355701571 0.554123516877492 0.304859036071551 GTF2H2 4 0.289738245452704 chr5:71014171:C:G 0.000935706677415382 0.950790002072981 2.4396185290627 1000 0.002997002997003 0.00311137325322484 0.74208543697993 0.291977816342099 GUSBP14 1 NA chr5:70047743:G:T 0.0320274393616419 0.997537728526151 1.01428257550736 1000 0.031968031968032 0.0327529859033808 0.238141655921936 0.761122026953242 LINC00461 86 0.179082554552771 chr5:88545672:A:G 2.12162467303489e-05 0.829253014961119 11.845238582144 1000 0.000999000999000999 0.00109487216650528 8.02240448395411 0.195215707287891 NR2F1-AS1 12 0.460622231303333 chr5:93515684:A:AT 0.00732324947554663 0.954069979637635 3.73370591370652 1000 0.036963036963037 0.0323654843439597 1.85971741278966 0.761122026953242 SNX18 77 0.234335314263747 chr5:54551581:C:T 0.000569199220831207 0.82820799245025 9.85580182697975 1000 0.015984015984016 0.014415524177568 5.01536527872086 0.626899502648872 SRP19 87 0.745687044446596 chr5:112900600:A:G 0.00157087106856413 0.861565305242828 6.04533448767417 1000 0.014985014985015 0.0188105146531856 10.4111879348755 0.670782952532598 EEF1E1 77 0.193427221707875 chr6:8096071:G:A 0.00133436624100236 0.810879313265339 8.83873481680369 1000 0.028971028971029 0.0288472188861566 6.72858777840932 0.761122026953242 NQO2 94 0.170736692569874 chr6:3017940:T:C 7.23853850357337e-05 0.839973385307764 15.183725238436 1000 0.001998001998002 0.00345225152917162 8.45531411568324 0.304859036071551 SERAC1 73 0.379567921733404 chr6:158112326:A:T 0.00241731245548382 0.858237307474878 7.02341667159674 1000 0.036963036963037 0.0314290134235378 4.6145444393158 0.761122026953242 TBC1D7 98 0.505900387683064 chr6:13300264:C:T 0.00182988227729841 0.778633611879444 6.72930948764528 1000 0.033966033966034 0.0346006702473172 6.59887123902639 0.768813555224539 UBR2 157 0.188817441735514 chr6:42657648:A:G 0.000734776214993516 0.840189575618118 8.75276912569409 1000 0.016983016983017 0.0151280060198041 11.8102080821991 0.642219874602636 ADCY1 129 0.0411807523784053 chr7:45667779:A:G 0.00101855064505596 0.765003198772265 14.7894345165491 1000 0.044955044955045 0.0432369238183996 13.7751299381256 0.81397373811417 AGBL3 231 0.819401091440839 chr7:135021522:G:A 0.0010331711288788 0.823901280610246 8.63053214677182 1000 0.013986013986014 0.0215698813929724 8.00945227543513 0.700048952563335 CHCHD3 373 0.206169826870088 chr7:133009237:A:G 0.000453412974748657 0.711344084153894 15.2553494761738 1000 0.034965034965035 0.0316170471468692 23.1685182412465 0.761122026953242 UBAP2L 51 0.560188750753386 chr1:154233736:C:T 0.00385546444243201 0.825124975007535 5.7361523174103 1000 0.038961038961039 0.0449666664165875 3.99168241421382 0.81397373811417 LRCH4 3 0.28406952529446 chr7:100575858:A:G 0.0127668804558825 1.05532096836644 2.65375874199855 1000 0.037962037962038 0.0274014570957469 0.480599570274353 0.761122026953242 MDFIC 37 0.483756178060653 chr7:114972054:C:T 0.00528038505018835 0.961858204919724 8.97498184459434 1000 0.045954045954046 0.0528672110628576 3.00200226306915 0.81397373811417 PILRB 2 1 chr7:100363571:A:G 0.0303417628419569 0.955712319886778 0.930802328033982 1000 0.037962037962038 0.0330723891012374 0.258103466033936 0.761122026953242 ZFAND2A 62 0.903562056918713 chr7:1145813:A:G 0.00857023049743388 0.877165144722176 4.13006611677895 1000 0.04995004995005 0.0545305927612083 3.19780082305272 0.81397373811417 ZNF138 145 0.561410911792656 chr7:64864507:T:C 0.000253470614367646 0.888579567039555 12.430040802628 1000 0.00899100899100899 0.00621589909219438 10.5605381449064 0.382170623495951 XPR1 198 0.542420011866062 chr1:180762592:C:A 0.00219597189928633 0.818359809657873 9.67085358181875 1000 0.042957042957043 0.0449248460497146 25.0713872392972 0.81397373811417 PDLIM2 32 0.153659233561348 chr8:22599692:T:G 0.00136305610497456 0.903691371390635 8.68888061068059 1000 0.022977022977023 0.0186670332180023 3.52992637554804 0.670782952532598 ZNF7 1 NA chr8:144843209:T:C 0.00395080814745419 0.993582913558371 1.04453732848306 1000 0.00799200799200799 0.00427479146995893 0.263671465714773 0.304878127637471 EPB41L4B 165 0.0249790936556252 chr9:109325521:A:G 0.000500263983156501 0.795542480478134 38.5847988693784 1000 0.035964035964036 0.0460287677075258 20.0742521047592 0.81397373811417 GSTO2 28 0.580602857795492 chr10:104265500:G:T 0.00434983484487939 0.936418769379843 3.72030016131376 1000 0.027972027972028 0.0212910953180279 3.18129171530406 0.700048952563335 LCOR 26 0.761297483307207 chr10:96835569:G:T 0.00416299620107374 0.899067702815786 5.07177231291632 1000 0.032967032967033 0.0318771736987676 3.09395180940628 0.761122026953242 LRRC27 155 0.345994839164841 chr10:132330501:T:C 1.09658986335859e-08 0.860169706206479 15.2585798874412 1000 0.000999000999000999 1.55691493818651e-06 16.1670718948046 0.00138798966739327 MRPL43 9 0.443105663996964 chr10:100990864:C:T 0.002749341782602 0.990941823183603 2.90480238266792 1000 0.00899100899100899 0.00834126383443382 0.895612760384877 0.451480353108229 PRXL2A 59 0.386707679393112 chr10:80407351:T:G 0.00109201363403333 0.853448598322328 7.08619133703038 1000 0.017982017982018 0.0164729637013145 5.93011048634847 0.643090351740528 RASGEF1A 75 0.24062439840111 chr10:43252805:C:T 0.00203341638130705 0.818547016687184 11.6249287985249 1000 0.045954045954046 0.0490099095751996 8.75882320006688 0.81397373811417 MAP6 61 0.36570506912445 chr11:75589003:G:A 8.83240628397619e-05 0.864929778412915 10.3629377133868 1000 0.004995004995005 0.00246348231495342 7.2568949341774 0.270808743500223 PTPRJ 129 0.538944526947926 chr11:48070424:G:C 0.000787279325071499 0.881593190753252 9.73233394504297 1000 0.017982017982018 0.0141541649607078 11.4923837860425 0.626899502648872 TMEM25 5 0.158987710223297 chr11:118551525:A:C 0.00448158529230624 0.921152721775878 3.23012960465091 1000 0.023976023976024 0.0205362717137916 0.929204082489014 0.700048952563335 C1RL 34 0.307383964914259 chr12:7111653:G:A 0.00222953705557982 0.884502690471957 10.2291019661576 1000 0.038961038961039 0.0363625306832288 4.94923934539159 0.778091105533197 GLIPR1L2 109 0.916191865292504 chr12:75413201:G:C 0.000151881795077302 0.937079010299693 3.61911215568278 1000 0.001998001998002 0.000896885759753142 3.81521661281586 0.177683034404428 DOCK7 241 0.911647200101219 chr1:62568692:A:C 1.58730842134691e-05 0.814273635859816 6.39720239384033 1000 0.000999000999000999 0.000592011971510237 28.0204995075862 0.131944668150344 KLRD1 135 0.317335135943376 chr12:10330784:T:C 5.71709233502249e-05 0.780528360400649 12.1323153528898 1000 0.00599400599400599 0.00366826833754192 13.2274875402451 0.304859036071551 POP5 14 0.96623589172518 chr12:120585686:G:C 0.00288821829913477 0.904551721186131 2.69914001590476 1000 0.015984015984016 0.0126384459234995 1.01203637520472 0.593009186357884 POU6F1 47 0.137838443423236 chr12:51218764:A:G 0.00208799432188655 0.903156402809917 10.7796523316096 1000 0.035964035964036 0.0332964206967767 6.71041165987651 0.761122026953242 EIF4G3 322 0.672583575494963 chr1:21145113:T:A 0.00265693806063394 0.808591320035489 7.98746947498737 1000 0.03996003996004 0.046676743333869 50.2691655437152 0.81397373811417 RMST 40 0.0778606815170472 chr12:97460626:T:C 7.92712837511811e-05 0.846885750337742 10.3491965936649 1000 0.001998001998002 0.00256101755852868 5.28693955341975 0.270808743500223 TRHDE-AS1 53 0.422304215253896 chr12:72252115:A:G 0.000423415621766066 0.804434729832368 8.59584026850893 1000 0.015984015984016 0.0115824082634274 7.4435560186704 0.558146863072731 DLEU2 78 0.185497579441291 chr13:49994164:CATAAAT:C 0.00109153950634444 0.856377162747307 7.08285672558546 1000 0.01998001998002 0.0162143372999207 5.07933724323908 0.643090351740528 PCCA 449 0.0843092691329489 chr13:100085635:G:GT 0.000210189513425663 0.809970209156177 49.3929479675884 1000 0.022977022977023 0.0263156337451657 42.4002932270368 0.761122026953242 ISCA2 6 0.491666463212516 chr14:74489796:G:C 0.00314648540347084 0.978397027032822 2.97572846413351 1000 0.011988011988012 0.0103835868105111 0.846424829959869 0.528969579518323 KTN1 112 0.60352881835686 chr14:55686589:C:T 0.00318903214736088 0.789385984329234 5.32077377729733 1000 0.040959040959041 0.0422055428657659 10.164588145415 0.81397373811417 PPP2R5C 118 0.123379741639914 chr14:101879356:G:A 0.00130678396743222 0.835589315411511 17.2288430145481 1000 0.033966033966034 0.0440243033599718 13.8240080674489 0.81397373811417 PPP4R4 55 0.874485257935488 chr14:94182370:A:G 0.00495257403813876 0.938676827451646 4.48350187188727 1000 0.023976023976024 0.0283303004585948 2.9816903034846 0.761122026953242 TMEM179 20 0.436519938090583 chr14:104590765:A:G 0.00152026814239858 0.859723531739585 5.9813980694646 1000 0.016983016983017 0.0182883308139985 2.59080282847087 0.670782952532598 CCDC32 65 0.52789386920356 chr15:40564322:C:T 0.000614595106092519 0.936111750356086 5.2474578486784 1000 0.00599400599400599 0.00474144423479709 6.37709826628367 0.314301160594092 COMMD4 14 0.201836773838337 chr15:75336500:C:G 0.00611936163182358 0.895093079000232 4.14758390692203 1000 0.02997002997003 0.0380940785777494 2.13294103940328 0.7897876988852 MORF4L1 30 0.116161494248961 chr15:78873268:G:A 0.00139582813888328 0.881498557088259 5.08864463749206 1000 0.011988011988012 0.0131910273903242 4.49599941174189 0.603066713767899 TCF12 422 0.516120805371355 chr15:57209296:T:G 0.00121169738755256 0.731254952932379 8.50322783765675 1000 0.032967032967033 0.0379274475494107 28.8362814029058 0.7897876988852 TM2D3 24 0.296851588525022 chr15:101643133:T:A 0.000306842560434561 0.91482212358718 5.64595105771348 1000 0.004995004995005 0.00305664584448334 3.2948153535525 0.291977816342099 ZNF280D 115 0.568605766396565 chr15:56628949:A:G 0.00326481141297486 0.817233727131043 6.68800692540801 1000 0.042957042957043 0.0460254141851137 14.8175123214722 0.81397373811417 IST1 67 0.199714533264426 chr16:71918711:G:C 0.0030598127733471 0.877688378743993 7.29897223534544 1000 0.037962037962038 0.0366571244334204 5.68855671485265 0.778091105533197 SPATA33 43 0.439104815066067 chr16:89673442:C:G 0.000664317951530657 0.880715751102804 6.08731064649031 1000 0.00699300699300699 0.00808676951273884 4.55474392970403 0.451480353108229 TVP23A 49 0.0794103659347905 chr16:10758317:T:G 0.000761006233882533 0.847236576293013 15.0925582194307 1000 0.028971028971029 0.0238329871228416 6.90152839422226 0.72290785558797 WDR59 212 0.0403675329515008 chr16:74882771:T:C 1.69216212486667e-05 0.798391252266591 31.0885576927125 1000 0.003996003996004 0.00258202391447212 27.1115448435148 0.270808743500223 ACTG1 29 0.333661261098582 chr17:81505920:G:A 0.00556204462344623 0.887161230989742 6.18206147671076 1000 0.043956043956044 0.0514153718772261 4.67496377229691 0.81397373811417 MSI2 199 0.011297264063941 chr17:57639320:A:G 3.95588953929771e-05 0.652869949564383 60.4107471481686 1000 0.020979020979021 0.0215120639248847 29.1105511228244 0.700048952563335 KCNA3 34 0.548616272394099 chr1:110675201:G:A 0.00227945828303477 0.855798123778807 6.03718033195936 1000 0.030969030969031 0.026539877590108 4.8812775015831 0.761122026953242 SUZ12P1 30 0.292282410606829 chr17:30788361:G:A 0.000101736256039264 0.819790678283999 6.30635716194148 1000 0.002997002997003 0.0025460829930685 3.76771321296692 0.270808743500223 ZNHIT3 17 0.782138588067077 chr17:36482702:C:G 0.00627742492791894 0.975454174459609 2.55052132171224 1000 0.017982017982018 0.0177379875303399 1.38113222122192 0.670782952532598 SLC39A6 54 0.661883857586612 chr18:36123911:T:C 2.99342095105848e-05 0.946615731301132 6.77219179407716 1000 0.000999000999000999 0.000324958589974251 3.96359121799469 0.0965668609873483 TMX3 12 0.0656801462863037 chr18:68716289:AT:A 0.0040200640605883 0.908787022349734 3.64806894299292 1000 0.023976023976024 0.0219869553244794 0.991855549812317 0.700048952563335 LIN7B 29 0.698659901282613 chr19:49118166:C:T 0.00374659360626539 0.85576381091 3.08000648284812 1000 0.02997002997003 0.0226597039795006 3.26997940142949 0.708811442025431 MISP3 7 0.842157422128179 chr19:14068269:A:G 8.64055490445992e-06 0.947068620690837 2.06251514501504 1000 0.000999000999000999 3.21171792801267e-05 1.17578588326772 0.0143162326641165 ZNF320 107 0.145031280787436 chr19:52898507:A:G 0.00107968396101543 0.807894538536028 20.9030473925242 1000 0.046953046953047 0.0494223781596042 14.5696278015772 0.81397373811417 ZNF577 168 0.279196863842943 chr19:51850184:G:A 7.13468416112528e-05 0.781249590160025 13.6508677448673 1000 0.00799200799200799 0.00475946793945064 12.4319277246793 0.314301160594092 ACP1 37 0.235068167359879 chr2:281741:T:C 0.00227326981672316 0.858517661772007 4.88260040695503 1000 0.025974025974026 0.0217725314796493 4.15678768555323 0.700048952563335