geneId variants.cis LD best.snp best.nominal.pv shape1 shape2 nb.perm pv.emp.perm pv.emp.beta runtime fdr_bh FYTTD1 1 NA chr3:197777303:C:T 0.0200487640807603 1.04355691208081 1.12039901321156 1000 0.01998001998002 0.0189829328179291 0.307880878448486 0.737080162844733 IP6K2 11 0.981449562627843 chr3:48714387:G:T 0.00154311731418322 0.975176876495929 1.46176290899999 1000 0.002997002997003 0.0026307378308685 0.892126560211182 0.357517271215029 LRCH3 28 0.051737705310187 chr3:197856528:G:A 0.00217532030904288 0.914410911561035 9.83720175086001 1000 0.032967032967033 0.0303583695358507 3.29821368058523 0.820879433761138 MBD4 6 0.257410903711778 chr3:129428575:G:A 0.0144501734601534 1.12142571905518 3.10858496919969 1000 0.027972027972028 0.0292676429903633 0.528564854462941 0.820879433761138 NUDT16 1 NA chr3:131389444:T:C 0.041151540160318 1.07266018199294 1.12029055943018 1000 0.035964035964036 0.0366622872945456 0.217777812480927 0.888346992528188 PDCD6IP 139 0.93026162352188 chr3:33804220:C:G 0.00143059159475523 0.949610676420965 5.39123067040389 1000 0.00599400599400599 0.00998519428646528 3.8197180112203 0.678493951765316 TNIK 401 0.00666888755870833 chr3:171455492:C:T 6.29487379244509e-06 0.888540265307396 90.0722142023749 1000 0.000999000999000999 0.00136067347399899 44.3494635820389 0.308192541860771 GRK4 139 0.638864707129498 chr4:2992064:G:C 0.000955335185322315 0.835953613095645 10.32200506677 1000 0.021978021978022 0.022111240274017 11.0977013667425 0.759241361305306 LDB2 123 0.0135189754563717 chr4:16645122:A:G 0.000717461117533236 0.857343871776145 26.2071187383067 1000 0.036963036963037 0.0345968681308593 11.5940666158994 0.88229809558411 PDLIM5 267 0.26727928928511 chr4:94658441:G:T 0.000186406056355448 0.769494979993925 17.1250178560591 1000 0.00799200799200799 0.0129152528169136 20.5462046384811 0.679676057518432 RGS12 124 0.160627941743696 chr4:3413609:C:T 2.93596258769124e-05 0.83396564737693 18.4221257601253 1000 0.002997002997003 0.00199650569032387 13.6138475378354 0.357517271215029 TET2 83 0.374788824024278 chr4:105149907:A:G 0.000206104952865438 0.828924791183564 8.21132552141714 1000 0.00599400599400599 0.00531867331331882 9.2791117310524 0.602339752733356 CAST 122 0.118257691067805 chr5:96667575:A:G 0.000424033905889964 0.906764598472129 22.4072908926424 1000 0.014985014985015 0.0151189326425665 10.8264410972595 0.708504464180961 NIPBL 40 0.98399941816066 chr5:36995103:T:A 0.0181425204309686 0.997911173385627 2.1740699286287 1000 0.048951048951049 0.0393055500655461 1.42134936650594 0.888346992528188 SERINC5 198 0.0356254602933337 chr5:80178495:T:C 0.000130754990118387 0.847341469540692 41.6941434907388 1000 0.018981018981019 0.012734934603416 15.802235241731 0.679676057518432 CEP85L 313 0.306246767808508 chr6:118502812:A:G 0.000388712035223726 0.845860180301593 14.1632880710053 1000 0.010989010989011 0.0129088573133339 10.4913761019707 0.679676057518432 ACHE 19 0.65638133872882 chr7:100894677:C:T 0.00668681992484899 0.9534465460006 3.43437328830335 1000 0.02997002997003 0.0275087464176835 1.17521876891454 0.795412476204934 ACTL6B 2 0.131789856292129 chr7:100642568:A:G 0.0228144609617131 0.966269898352594 1.81233932416331 1000 0.046953046953047 0.0458771708999624 0.497028871377309 0.90354742020618 ERV3-1 40 0.766085425179067 chr7:64989251:A:G 0.00188807316961648 0.94612986251354 3.17897256725863 1000 0.010989010989011 0.0080035445806979 1.36472636461258 0.639812769715791 LAMTOR4 11 0.677518947211579 chr7:100148578:G:A 0.00401213708861448 0.873265483194076 3.82596970692244 1000 0.028971028971029 0.0268281323968873 1.19698025782903 0.79259634624717 USP33 30 0.761204674509304 chr1:77726042:T:C 0.00801553337604743 0.910059381061708 4.16377032517869 1000 0.044955044955045 0.0459417857005964 2.21644219954809 0.90354742020618 USP48 48 0.20672145509706 chr1:21674290:T:C 0.00153851162721252 0.911214926111469 11.0388651710372 1000 0.024975024975025 0.0249794532574054 5.62374446392059 0.771091816778732 TMED4 19 0.631247854633197 chr7:44573154:T:C 0.0110851342790131 0.990120661695042 2.62059900640119 1000 0.031968031968032 0.0298864522147515 0.82821178038915 0.820879433761138 TMEM120A 18 0.208247047014612 chr7:75985969:G:A 0.00568396312324704 0.871989332402759 4.92551281764525 1000 0.042957042957043 0.0454704133701898 1.86505651871363 0.90354742020618 ZNF138 148 0.509164851450082 chr7:64853811:A:T 0.00135616418057882 0.806530162120374 12.0256886103049 1000 0.034965034965035 0.0382500081089556 7.28989359140396 0.888346992528188 OTUD6B-AS1 22 0.789937703508727 chr8:91057425:G:A 0.000643698005245552 0.919667259459164 2.21220059861795 1000 0.001998001998002 0.00244937550426314 1.54344051281611 0.357517271215029 ASTN2 1229 0.00813611501443217 chr9:116727954:G:A 8.09592112849256e-05 0.812335550015235 211.451316125141 1000 0.027972027972028 0.0389800961286312 95.3692253430684 0.888346992528188 BRD3OS 8 0.0956418150843585 chr9:134024985:C:G 0.000496849700154733 1.02819240893501 5.84311885363576 1000 0.000999000999000999 0.00243539856722743 1.29483575026194 0.357517271215029 LRRC27 96 0.471024034019884 chr10:132332419:C:T 0.00052327759839943 0.80649084398897 11.2545278398406 1000 0.015984015984016 0.0168892885841768 9.98842202027639 0.717266974559258 RASGEF1A 59 0.26579843463424 chr10:43270037:A:C 0.0023231341380614 0.8299965633355 7.75791879231481 1000 0.036963036963037 0.0373568042173946 5.56100136439006 0.888346992528188 STK32C 227 0.109190385527428 chr10:132331936:A:C 0.000507020081040865 0.793520498189919 34.1599693061609 1000 0.035964035964036 0.0426235752813714 22.6736735065778 0.90354742020618 USP54 1 NA chr10:73606810:T:C 0.00602013392771272 0.943036098477843 0.94926239280567 1000 0.010989010989011 0.00766261792403926 0.348147944609324 0.639812769715791 VTI1A 134 0.0144123976155407 chr10:112796123:G:A 0.000202115234952616 0.891417198597829 42.3527547484611 1000 0.012987012987013 0.0148943232421085 14.0752107620239 0.708504464180961 DIXDC1 46 0.785210944082265 chr11:111998826:G:C 0.00973153790371195 0.961588435722354 2.75169291244819 1000 0.031968031968032 0.030805629964546 3.508445139726 0.820879433761138 GRAMD1B 177 0.0102159041873173 chr11:123488390:C:A 0.000323093556605758 0.775935498332847 44.4948764403133 1000 0.044955044955045 0.039874294734525 22.0972550551097 0.888346992528188 HSPA8 31 0.69670708143801 chr11:123061657:A:C 0.00178568363842668 0.887264940483806 4.05921360119621 1000 0.011988011988012 0.0130033682821775 2.16536773840586 0.679676057518432 SVIP 21 0.514571579622627 chr11:22828406:A:G 0.00549535340028406 0.935670562250686 3.56873613159019 1000 0.02997002997003 0.0255328416151898 2.58610817591349 0.771091816778732 MDM2 50 0.596154666278601 chr12:68837097:G:T 0.000668791284560766 0.881379747387783 5.78605993933454 1000 0.004995004995005 0.00774633606318679 6.26024721463521 0.639812769715791 DNAH14 212 0.111084256708431 chr1:225335749:G:A 0.00100799591505429 0.853044708486003 24.739088900898 1000 0.046953046953047 0.0447122349855581 17.773352543513 0.90354742020618 BTBD7 60 0.934724728592289 chr14:93249642:C:G 0.00414805073468782 0.942530406877155 3.48638812178871 1000 0.032967032967033 0.0186479455474372 2.79887750546138 0.737080162844733 WDR20 31 0.913764242098791 chr14:102203675:G:A 0.00491220462328545 0.907315808842925 3.41251954871368 1000 0.025974025974026 0.0249536112849187 1.62389359076818 0.771091816778732 EMC4 12 0.565889306042285 chr15:34227362:T:G 0.00623437665876447 0.901038353166848 2.40676634481523 1000 0.034965034965035 0.0231251967134475 1.11495884259542 0.759241361305306 MRTFB 3 0.110497317456202 chr16:14184268:G:A 0.017499696057393 0.988632543477787 2.74363242584648 1000 0.044955044955045 0.0490872350843644 0.617911557356516 0.90354742020618 PDXDC1 106 0.277675373695153 chr16:15034559:A:G 0.00239233970587105 0.786405366596486 8.47592533621017 1000 0.041958041958042 0.0493717775052032 9.08996102015177 0.90354742020618 TMC7 75 0.517210586128559 chr16:18999516:G:A 0.00377152729035868 0.906636360353182 6.27164754517309 1000 0.035964035964036 0.0342487631891082 7.74974610408147 0.88229809558411 TMEM219 23 0.940894986488073 chr16:29967506:G:A 0.00727688143898153 0.934436668580029 2.45319548208595 1000 0.031968031968032 0.0234644129321728 2.33978940248489 0.759241361305306 HIVEP3 581 0.0358841311660238 chr1:41636291:C:T 0.000369370933440916 0.786925864378553 54.2058512816299 1000 0.048951048951049 0.0491420528906533 50.0117812832197 0.90354742020618 ASPSCR1 22 0.374415986592715 chr17:81987207:G:A 0.00222133211708242 0.860894048220306 5.41873329801212 1000 0.021978021978022 0.0230999805374409 2.03872582515081 0.759241361305306 MSI2 177 0.0134864010500072 chr17:57584150:G:C 3.87687124403513e-07 0.696027300595637 50.2457890061678 1000 0.001998001998002 0.000578720811067719 24.3017594496409 0.157296316448206 NDUFAF8 16 0.483788352728405 chr17:81239505:G:A 0.00353114723561943 0.828710407878117 4.72163476348178 1000 0.034965034965035 0.0350582024735408 2.09636189937592 0.88229809558411 NETO1 103 0.0321338395094769 chr18:72854143:G:C 0.000188433449523462 0.823929737750259 13.0463799956985 1000 0.003996003996004 0.00749991270258841 11.163328965505 0.639812769715791 SETBP1 219 0.0158985634239396 chr18:45028225:T:C 6.09532005579894e-05 0.858002029731976 43.621616307159 1000 0.00899100899100899 0.00649264178304068 22.7947965145111 0.639812769715791 ZNF519 54 0.365079434032518 chr18:14133825:C:T 0.00103823795485924 0.84757958636415 7.29986295857394 1000 0.015984015984016 0.016685641136538 5.04284593661626 0.717266974559258 COPE 18 0.281171182836776 chr19:18921828:T:C 0.00130733159463925 0.90368325589119 5.7777398738762 1000 0.014985014985015 0.0124277193751509 2.08160221179326 0.679676057518432 GPX4 32 0.371365526480311 chr19:1106616:T:C 0.0034300525019807 0.899144828120018 8.12988729200562 1000 0.03996003996004 0.040910432992359 3.94580138921738 0.896730297364772 NDUFA7 22 0.261627876893039 chr19:8326154:A:G 0.000917289767273344 0.889240366499085 5.26952239782737 1000 0.00799200799200799 0.00900713590657198 2.24556452830633 0.656275194956323 COX7A2L 53 0.458230642676365 chr2:42362781:C:T 0.000723759471868757 0.844046712923526 6.12595439220114 1000 0.013986013986014 0.0108034145826901 5.46082309087118 0.679676057518432 DTNB 259 0.0732964018421874 chr2:25432903:T:C 0.000109993176735657 0.746034391504621 29.3938512631916 1000 0.012987012987013 0.0150382041779733 26.8116147875786 0.708504464180961 PANTR1 47 0.641305668978448 chr2:104853406:A:G 0.00262372571294633 0.920666426734892 6.09868907979996 1000 0.018981018981019 0.0226449748674193 4.43040297031403 0.759241361305306 NOS1AP 393 0.0754165038027324 chr1:162342963:T:G 0.000632814357509393 0.819441516296932 48.6058579699737 1000 0.048951048951049 0.0606519230408212 29.4288293997447 0.9158440379164 CEP250 80 0.947911780680456 chr20:35487005:G:A 0.0010292792764669 0.963721532518454 2.78048662831891 1000 0.002997002997003 0.00356803272449066 4.5126305103302 0.440814224780255 FLRT3 9 0.443250734308095 chr20:14323443:T:C 0.00885813519797629 1.00246854186196 2.67580665292187 1000 0.033966033966034 0.0232962754685037 0.954341447353363 0.759241361305306 IDH3B 13 0.224030675139736 chr20:2656425:T:C 0.00183962154522366 0.87383756915078 5.51448891761757 1000 0.020979020979021 0.0187380494472171 1.54143782059352 0.737080162844733 NOP56 33 0.348265520341063 chr20:2658924:G:T 0.000852793046078326 0.929386465309866 7.36298676585416 1000 0.012987012987013 0.00917529705972784 2.9821840484937 0.656275194956323 SOGA1 51 0.375688462649015 chr20:36833363:G:A 1.92037859538807e-05 0.888759419801832 8.05215668040789 1000 0.001998001998002 0.000425798200911461 5.79217141866684 0.144664938759669 TBC1D20 37 0.631944068100781 chr20:463841:T:C 0.00207811838411509 0.935232062041751 7.66101184854015 1000 0.021978021978022 0.0211407695147075 4.83209381103516 0.759241361305306 GET1 96 0.46274121915989 chr21:39431430:T:G 0.000644576228730376 0.80687424538928 8.74086898619921 1000 0.016983016983017 0.0162338920758062 6.91054366032283 0.717266974559258 NCAM2 612 0.0330871727649237 chr21:21479732:A:C 0.000630520476658236 0.854894005411563 52.9148304048673 1000 0.046953046953047 0.056769897315029 41.2274151285489 0.907480682196933 CHCHD10 3 0.13093806990457 chr22:23761300:C:A 0.0150339868439804 0.953717004100049 2.69351261111561 1000 0.045954045954046 0.0469106678355051 0.624382400512695 0.90354742020618 CHRD 11 0.326423675413815 chr3:184379297:A:G 0.00499848973667427 0.914935008333522 5.78807221980916 1000 0.03996003996004 0.0397219336930553 1.23620860973994 0.888346992528188 CMSS1 104 0.45677969416164 chr3:100003720:G:C 0.00360783408532184 0.852324070989457 9.33474351166504 1000 0.048951048951049 0.0575303379069088 7.37959931691488 0.907480682196933